Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015891343.1_cds_XP_016446120.1_41011
CDS Infomation

[gene=LOC107771293] [db_xref=GeneID:107771293] [protein=E3 ubiquitin-protein ligase TRAIP-like] [protein_id=XP_016446120.1] [location=complement(join(17988..18094,18241..18703,18785..18887,19665..19747,19870..19971,20830..21097,22046..22167))] [gbkey=CDS]
Sequence

ATGATAGGAGGGAATAACAGTTTTGGGAAGACAATTTGCTCAATTTGTTATGAAGATCTA
AACCCTATTATTGAAGACCTCCAATCCATTTCTATTTGCGGTCACGTTTTTCATGAGATT
TGTCTTCAGCAATGGTTTGAATACTGCACAAATGGAAAAAAGAAGAATTGTCCTGTCTGC
AAACAGGCTTGTTCAGAACAGAATGCGAATAGGCTTTATTTCCAATCAGTTGGTGATCCA
AATGATACTAGTCTGACCAAGAAACCTCGTGATCACGAAGAGGATCCACGGGAACTGAGA
AGTGAGGTCAAAATGTTGGAGGGGAAAGTTTTACAGTTGACTTCTACTTTGGAAAAACAG
CTGAAAGATCTCAAAGAAATCAATGCAGAGCTGTTCACATGCAAAGAAGAGTTGAAAATG
GAAGTGACTCTAAAGAATGAAACTGTGAAACAGGAGGCAGCCATTCAGCAGTTGCTACAT
CTTAAATCCAAGGAGTTAGATCGATCAACTTTGGAGTGCATAAGGCTAAAAGATGGAAAT
ATGGCTCTAGATAAGGAGCTTGCAGCACTCAAGTTGAGTTACAAAGAACTAATGACCAAG
TGTGACACTCATGGCAGACGAGAGGCTCGTTCTCTTAGGAAACTTGAGAAGGCTAAAGAA
AAGATAAATAAGTTGAAGACCAGGGTCCAAGAACTTGAGACGGCACTTGAAGGAAAAGAA
AAAGATAATGAAAATTTGAGAACTTTGAGAGTTGCCAAGAAAAACTTAGAGTTGTATCAA
GGAAGCAAAGAACCCAAAGTTGACAGATGTTCATATGAGAATCAGAATAAGGCACCTACT
GCGACAGAAGTAGATTTATGCATGGTCACTGGCTCATGCGATGATTTATCTAGACCAAGG
AGAAAAAGAAAGTACAAGTCTAAGGAAAAGAGTATACAAAACACGGCAGAAGATATTATA
ACTGGTGGAAGTCAAGTGCAGGGATCAGAAAATAAGGATGGAATCTCAGGTTCAAGGAAT
TCCCCTGTTATTATTCTTGATGATGATACTGATCTTCCGCCTCTAGATGACGTTACACAG
CATCAGCCCTCATTTCGCATCAGGAAAGAGACTTCTGCACCAGTTATGCTTGCCCAACCA
GGAGACAGCTGCTTTTCTGGTGGATTATTAGGTCCTGATGGGACTTACTGGCACTTGGGA
AAATGGTGCAAGAAACTAAAGGAAAAGGGATCTGGATCACTGTCTTGA

Peptide Sequence

PEP ID

XP_016446120.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase TRAIP-like [Nicotiana tabacum]
Sequence

MIGGNNSFGKTICSICYEDLNPIIEDLQSISICGHVFHEICLQQWFEYCTNGKKKNCPVC
KQACSEQNANRLYFQSVGDPNDTSLTKKPRDHEEDPRELRSEVKMLEGKVLQLTSTLEKQ
LKDLKEINAELFTCKEELKMEVTLKNETVKQEAAIQQLLHLKSKELDRSTLECIRLKDGN
MALDKELAALKLSYKELMTKCDTHGRREARSLRKLEKAKEKINKLKTRVQELETALEGKE
KDNENLRTLRVAKKNLELYQGSKEPKVDRCSYENQNKAPTATEVDLCMVTGSCDDLSRPR
RKRKYKSKEKSIQNTAEDIITGGSQVQGSENKDGISGSRNSPVIILDDDTDLPPLDDVTQ
HQPSFRIRKETSAPVMLAQPGDSCFSGGLLGPDGTYWHLGKWCKKLKEKGSGSLS

Transcript Sequence

Gene sequence data has not been registered.